PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22228
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family E2F/DP
Protein Properties Length: 431aa    MW: 47598 Da    PI: 9.3701
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22228genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.61.8e-2252117171
   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
               rk+ksL+ll+++f++l+ +   + + l++++++L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  EMT22228  52 RKQKSLGLLCSNFVALYDRDGVESIGLDDASRRL---GV--ERRRIYDIVNVLESVGILARKAKNRYSWIG 117
               79*****************999************...**..****************************98 PP

2E2F_TDP79.33.4e-25196276171
   E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 
               rkeksL+lltq+f+kl+ + e+  +++l+e+ak L+ e     ++++k+RR+YDi+NVL++l+liek    ++k+++rw g
  EMT22228 196 RKEKSLGLLTQNFVKLFLTMEQvSTISLDEAAKFLLGEgheesNMRTKVRRLYDIANVLSSLKLIEKtqvdTRKPAFRWLG 276
               79*****************9999**********************************************999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-2548118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.24E-1551116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.9E-2752117IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.1E-2053117IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-21193277IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-30196276IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-20197276IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.63E-13198277IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MSAAPHSSTA VETPTATAVA PAPLPRLPNP LPLPLFAERG GGARLRHHAY SRKQKSLGLL  60
CSNFVALYDR DGVESIGLDD ASRRLGVERR RIYDIVNVLE SVGILARKAK NRYSWIGFGG  120
VPMALRELKE RALREKSGLA PLPVEELSAA NMSDDEDDDK LGDPEAETEG DKLSQTVDNP  180
SDMPDAPPCR LRSDHRKEKS LGLLTQNFVK LFLTMEQVST ISLDEAAKFL LGEGHEESNM  240
RTKVRRLYDI ANVLSSLKLI EKTQVDTRKP AFRWLGMAGK PKAENGVTVV ASPARKTLSN  300
KRVFGTELTN IGINRSQLEP TIQKKAKLAQ GGADILKSYN VAAQKQPGQV NKSGFVYGPF  360
HPSCARKQEP DDCNNWESLA DSFRPQYQNP ALGDLFAHYV DAWKSWYSEF SQGSGIMQQH  420
LGSSVNNKRF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-36512703232Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756946.10.0PREDICTED: LOW QUALITY PROTEIN: E2F transcription factor-like E2FF
TrEMBLM8BKC10.0M8BKC1_AEGTA; Transcription factor E2F7
STRINGBGIOSGA005653-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-107DP-E2F-like 1